Almond Flour Blueberry Muffins Greek Yogurt

Golden almond flour blueberry muffins with Greek yogurt bursting with juicy berries on a wire cooling rack Save
Golden almond flour blueberry muffins with Greek yogurt bursting with juicy berries on a wire cooling rack | cookingwithkendra.com

These moist, tender muffins are bursting with juicy blueberries and made with wholesome almond flour and creamy Greek yogurt. The combination of almond and coconut flour creates a perfectly tender crumb while keeping them gluten-free. Greek yogurt adds moisture and a subtle tang, while honey or maple syrup provides natural sweetness. Ready in just 40 minutes, these make an ideal grab-and-go breakfast or satisfying snack.

The smell of blueberries bursting in the oven always pulls me back to my grandmother's tiny kitchen, where she'd bake muffins every Sunday morning regardless of the season. I started experimenting with almond flour versions when my daughter developed gluten sensitivity, and honestly, these turned out better than the wheat ones I grew up on. The Greek yogurt was a happy accident—I'd run out of milk and needed something creamy, and now I can't imagine making them any other way.

Last summer I made these for a neighborhood brunch, and my friend Sarah actually asked for the recipe before she'd even finished her first bite. Watching her eyes light up when I told her they were gluten-free made my whole week. Now she requests them every time we have coffee together.

Ingredients

  • Almond flour: This creates the most incredibly tender crumb while adding protein and healthy fats
  • Coconut flour: Essential for structure since almond flour needs something to help it bind together
  • Baking powder and baking soda: The combination ensures these rise beautifully despite being gluten-free
  • Greek yogurt: Makes these muffins exceptionally moist and adds protein while keeping them tender
  • Eggs: These provide structure and help bind the gluten-free flours together
  • Honey or maple syrup: Adds just enough sweetness without being overpowering
  • Coconut oil or butter: Contributes to the moist texture and rich flavor
  • Vanilla extract: Enhances the natural sweetness of the blueberries
  • Blueberries: Fresh or frozen both work beautifully here
  • Lemon zest: Brightens everything up and makes the blueberry flavor pop

Instructions

Get your oven ready:
Preheat to 350°F and line your muffin tin with liners or give each cup a quick coat of oil
Mix the dry ingredients:
Whisk together both flours, baking powder, baking soda, and salt until everything is evenly distributed
Prepare the wet mixture:
Whisk the yogurt, eggs, honey, melted coconut oil, and vanilla until you have a silky smooth consistency
Combine everything:
Pour the wet ingredients into the dry and fold gently with a spatula just until no flour streaks remain
Add the blueberries:
Fold in the berries and lemon zest, taking care not to crush them
Fill the muffin cups:
Divide the batter evenly among all 12 cups, filling each one quite full
Bake to perfection:
Bake for 22 to 26 minutes until golden brown on top and a toothpick comes out clean
Cool them down:
Let the muffins rest in the tin for 5 minutes before moving them to a wire rack
Gluten-free almond flour blueberry muffins with Greek yogurt topped with fresh blueberries and lemon zest Save
Gluten-free almond flour blueberry muffins with Greek yogurt topped with fresh blueberries and lemon zest | cookingwithkendra.com

My husband, who's usually skeptical of gluten-free baking, ate three of these straight from the oven and declared them better than regular muffins. That's when I knew this recipe was a permanent keeper in our house.

Making Ahead and Storage

I've learned these muffins actually taste even better on day two, which makes them perfect for meal prep. The flavors develop and the texture becomes even more moist overnight.

Customization Ideas

Sometimes I swap the blueberries for chopped strawberries or raspberries when they're in season. A sprinkle of cinnamon in the dry ingredients creates a lovely warmth during winter months.

Serving Suggestions

These are perfect for breakfast on busy mornings or as an afternoon snack with tea. They pair beautifully with a pat of butter while still warm from the oven.

  • Try crumbling one over Greek yogurt for an extra special breakfast bowl
  • These freeze beautifully for up to three months if you wrap them individually
  • A quick 20 second reheating in the microwave brings back that fresh-baked texture
Moist almond flour blueberry muffins made with Greek yogurt displayed in a white paper-lined muffin tin Save
Moist almond flour blueberry muffins made with Greek yogurt displayed in a white paper-lined muffin tin | cookingwithkendra.com

There's something so comforting about pulling a batch of these from the oven, the kitchen filled with vanilla and berries. I hope they become as beloved in your home as they are in mine.

Recipe FAQs

Yes, frozen blueberries work perfectly. Add them straight from the freezer without thawing to prevent bleeding into the batter and maintain their texture during baking.

Store in an airtight container at room temperature for up to 2 days, or refrigerate for up to 5 days. They also freeze well for up to 3 months—wrap individually and thaw at room temperature.

Almond flour is essential for the texture and gluten-free properties. Substituting with wheat flour would change the entire structure. For nut-free options, consider oat flour or a certified gluten-free flour blend, though results may vary.

Almond flour provides moisture and richness, while coconut flour helps absorb excess liquid and creates a tender crumb. Together they create the perfect texture for these gluten-free muffins.

Yes, substitute the Greek yogurt with coconut yogurt or a dairy-free alternative, and use coconut oil instead of butter. The texture may vary slightly but will still be delicious.

Bake for 22-26 minutes until the tops are golden brown. Insert a toothpick into the center—if it comes out clean or with just a few moist crumbs, they're ready. Let them cool in the tin for 5 minutes before transferring.

Almond Flour Blueberry Muffins Greek Yogurt

Moist, tender muffins bursting with juicy blueberries, made with wholesome almond flour and creamy Greek yogurt for a delicious gluten-free treat.

Prep 15m
Cook 25m
Total 40m
Servings 12
Difficulty Easy

Ingredients

Dry Ingredients

  • 2 cups almond flour
  • 1/2 cup coconut flour
  • 1 1/2 teaspoons baking powder
  • 1/2 teaspoon baking soda
  • 1/4 teaspoon fine sea salt

Wet Ingredients

  • 1 cup plain Greek yogurt
  • 3 large eggs
  • 1/3 cup honey or maple syrup
  • 1/4 cup melted coconut oil or unsalted butter
  • 2 teaspoons pure vanilla extract

Add-ins

  • 1 1/4 cups fresh or frozen blueberries
  • 2 teaspoons lemon zest

Instructions

1
Prepare the Oven and Pan: Preheat the oven to 350°F. Line a 12-cup muffin tin with paper liners or lightly grease each cup with oil or cooking spray.
2
Combine Dry Ingredients: In a large bowl, whisk together almond flour, coconut flour, baking powder, baking soda, and salt until thoroughly blended and no lumps remain.
3
Blend Wet Ingredients: In a separate medium bowl, whisk the Greek yogurt, eggs, honey or maple syrup, melted coconut oil or butter, and vanilla extract until smooth and uniform.
4
Mix Batter: Pour the wet mixture into the dry ingredients. Using a spatula, fold gently until just combined—be careful not to overmix as this can make the muffins dense.
5
Add Blueberries: Gently fold in the blueberries and lemon zest (if using) until evenly distributed throughout the batter.
6
Fill Muffin Cups: Divide the batter evenly among the 12 prepared muffin cups. The cups will be quite full, which is normal for this recipe.
7
Bake: Bake for 22 to 26 minutes, until the tops are golden brown and a toothpick inserted into the center of a muffin comes out clean.
8
Cool: Let the muffins cool in the tin for 5 minutes before transferring them to a wire rack to cool completely.
Additional Information

Equipment Needed

  • 12-cup muffin tin
  • Mixing bowls (large and medium)
  • Whisk
  • Rubber spatula
  • Measuring cups and spoons
  • Wire cooling rack

Nutrition (Per Serving)

Calories 180
Protein 6g
Carbs 12g
Fat 12g

Allergy Information

  • Contains eggs and dairy (Greek yogurt, butter if used)
  • Contains tree nuts (almond flour)
  • Always verify product labels for potential gluten, dairy, and nut cross-contamination if you have severe allergies
Kendra Lewis

Sharing simple, homemade recipes and handy cooking tips for fellow home cooks.